If you can, get another windowbox -- maybe a 4 footer if you can -- and move ONE or two zuke to that box. I would do this by digging as far away from the cuke you intend to keep -- straight down, then try to scrape the bottom of the box all the way to the zuke and lift out after running a knife along the side edges like you are getting a cake or bread out of a pan. Can you do that? Maybe a narrow flat shovel, or something like it (a mason's rectangular off-set trowel?) to help you accomplish this. Think delicate layer cake -- you are about to serve the multi-layered wedding cake to the father of the bride.....
MAINLY support the zuke seedling(s) you are going to keep and don't let the soil mix fall away from their roots. -- YOU NEED WATER THOROUGHLY but not soggy before doing this. Seedlings that are to be culled can be allowed to fall by the wayside (so to speak).
Fill the remaining space for the cuke with fertile but well draining soil mix. Give the zuke the same, and hopefully they will grow well.
I'm growing H-19 Littleleaf cucumber this year. They are supposed to be small and good for containers. Parthenocarpic too so doesn't require pollinators' or my help. I'm growing them on a short 4 ft garden fence but plan to put some in containers to see how they do as well. I did grow them in a 4 gal tote one year to see if I could grow them indoors during winter -- that was a bust due to unheard of pickleworm infestation and cuke not liking the cold temp and insufficient light... but any way. It looked like they would have been happy if I had tried in the summer growing season.